Assessing the effectiveness of AFB smear versus GeneXpert MTB/RIF and real-time PCR in diagnosing tuberculosis at Hue University of Medicine and Pharmacy Hospital
Original article | Vol. 17 No. 2 (2025)
Journal of Clinical Medicine Hue Central Hospital, Vol. 17 No. 2 (2025)
Original article

Assessing the effectiveness of AFB smear versus GeneXpert MTB/RIF and real-time PCR in diagnosing tuberculosis at Hue University of Medicine and Pharmacy Hospital

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Nguyen, H. B., Lê, T. B. C., Nguyễn, T. C. A., Nguyen, T. K. L., Phan, V. B. T., Tran , T. Q. T., … Ngo, V. Q. T. (2025). Assessing the effectiveness of AFB smear versus GeneXpert MTB/RIF and real-time PCR in diagnosing tuberculosis at Hue University of Medicine and Pharmacy Hospital. Journal of Clinical Medicine Hue Central Hospital, 17(2), 84–89. https://doi.org/10.38103/jcmhch.17.2.13
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DOI: 10.38103/jcmhch.17.2.13
10.38103/jcmhch.17.2.13
Nguyễn Hoàng Bách
Department of Microbiology, Hue University of Medicine and Pharmacy, University of Hue
https://orcid.org/0009-0005-0942-1148
Lê Thị Bảo Chi
Department of Microbiology, Hue University of Medicine and Pharmacy, University of Hue
Nguyễn Thị Châu Anh
Department of Microbiology, Hue University of Medicine and Pharmacy, University of Hue
Nguyễn Thị Khánh Linh
Department of Microbiology, Hue University of Medicine and Pharmacy, University of Hue
Phan Văn Bảo Thắng
Department of Microbiology, Hue University of Medicine and Pharmacy, University of Hue
Trần Thị Quỳnh Tâm
Department of Microbiology, Hue University of Medicine and Pharmacy, University of Hue
Lê Nữ Xuân Thanh
Department of Microbiology, Hue University of Medicine and Pharmacy, University of Hue
Đinh Thị Hải
Department of Microbiology, Hue University of Medicine and Pharmacy, University of Hue
Nguyễn Thị Đăng Khoa
Department of Microbiology, Hue University of Medicine and Pharmacy, University of Hue
Nguyễn Thị Tuyền
Department of Microbiology, Hue University of Medicine and Pharmacy, University of Hue
Ung Thị Thuỷ
Department of Microbiology, Hue University of Medicine and Pharmacy, University of Hue
Nguyễn Đức Hoàng Sang
Department of Microbiology, Hue University of Medicine and Pharmacy, University of Hue
Trần Thị Tuyết Ngọc
Department of Microbiology, Hue University of Medicine and Pharmacy, University of Hue
Hoàng Thị Minh Ngọc
Department of Microbiology, Hue University of Medicine and Pharmacy Hospital
Dương Thị Ngọc Mai
Department of Microbiology, Hue University of Medicine and Pharmacy Hospital
Ngô Viết Quỳnh Trâm
Department of Microbiology, Hue University of Medicine and Pharmacy, University of Hue

Abstract

Background: Tuberculosis (TB) remains a major global health challenge, with early and accurate diagnosis being critical for effective disease control. Traditional acid-fast bacilli (AFB) smear microscopy has limited sensitivity, particularly in smear-negative cases. The advent of molecular techniques, such as the GeneXpert MTB/RIF assay and real-time PCR, has significantly improved the rapid detection of Mycobacterium tuberculosis (MTB) and rifampicin resistance.

Methods: A total of 368 patients suspected of tuberculosis (TB) were analyzed using three diagnostic methods: AFB smear microscopy, GeneXpert MTB/RIF, and real-time PCR. Patient samples were collected from multiple hospital departments and categorized by demographic characteristics. AFB smear was performed using Ziehl-Neelsen staining, while GeneXpert MTB/RIF and real-time PCR were conducted following manufacturer protocols. Sensitivity, specificity, and positivity rates for each diagnostic method were compared to assess their effectiveness in detecting TB cases.

Results: A prospective study at Hue University Hospital (2023-2024) compared TB diagnostic methods in 368 patients. AFB smear microscopy detected only 7.6% of cases, while GeneXpert MTB/RIF and real-time PCR identified 6.3% and 20.5%, respectively. GeneXpert demonstrated 100% sensitivity/specificity, outperforming AFB (10% sensitivity) and PCR (82.1% sensitivity, 100% specificity). Most cases were in respiratory (18.4%) and infectious disease (16.1%) departments.

Conclusion: Findings highlight the critical role of molecular methods like GeneXpert and PCR in improving TB detection and urge their integration into routine screening to optimize early diagnosis and treatment.

Keywords:  Tuberculosis, GeneXpert MTB/RIF, Real-time PCR, AFB smear, Molecular diagnostics
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